DreEX0073011 @ danRer10
Exon Skipping
Gene
ENSDARG00000060303 | slc4a10b
Description
solute carrier family 4, sodium bicarbonate transporter, member 10b [Source:ZFIN;Acc:ZDB-GENE-081105-62]
Coordinates
chr9:51770981-51775979:-
Coord C1 exon
chr9:51775728-51775979
Coord A exon
chr9:51774247-51774315
Coord C2 exon
chr9:51770981-51771154
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGTTAATTGTGTTCCCTCAGTTC
3' ss Score
8.45
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
AAGGGCTGTGGGTATCATCTGGACCTGTTTATGGTGGGTGTGATGCTGGGCGTTTGCTCTATTATGGGCCTGCCATGGTTTGTGGCGGCGACCGTCCTGTCCATCTCTCATGTCAACAGTCTGAAGCTGGAGTCCGAGTGCTCGGCGCCTGGAGAACAGCCCAAATTCCTGGGCATCAGAGAGCAGCGGGTCACTGGACTCATGATCTTCCTCCTCATGGGCTGCTCTGTATTCATGACCTCCGTGCTGAAG
Seq A exon
TTCATTCCAATGCCGGTTCTGTATGGAGTTTTCCTGTACATGGGTGCGTCTTCACTGAGAGGAATACAG
Seq C2 exon
TTTTTCGATCGTTTGAGATTGTTCGGGATGCCGGCTAAACACCAGCCAGACTTCATTTACCTGAGGCACGTTCCCCTGCGAAAGGTTCACCTGTTCACCATCATCCAGCTCAGCTGTCTGGTCCTCCTGTGGGTCATCAAAACCTCCAGAGCCGCTATCGTCTTTCCCATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060303-'18-19,'18-18,19-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCTGGGCATCAGAGAGCA
R:
AACAGGTGAACCTTTCGCAGG
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]