GgaEX6042595 @ galGal4
Exon Skipping
Gene
ENSGALG00000011120 | SLC4A10
Description
solute carrier family 4, sodium bicarbonate transporter, member 10 [Source:HGNC Symbol;Acc:HGNC:13811]
Coordinates
chr7:20690420-20693492:-
Coord C1 exon
chr7:20693241-20693492
Coord A exon
chr7:20691909-20691977
Coord C2 exon
chr7:20690420-20690593
Length
69 bp
Sequences
Splice sites
3' ss Seq
TGCTTGTTTTGTTTGTGCAGTTT
3' ss Score
7.42
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
AAAGGGTGTGGATACCATCTCGACTTACTCATGGTGGCAGTCATGCTTGGAGTGTGTTCCATTATGGGATTGCCATGGTTTGTTGCAGCCACTGTCCTCTCTATTTCTCATGTGAACAGCTTAAAACTGGAATCAGAGTGTTCTGCTCCAGGGGAACAGCCAAAATTTCTTGGAATCCGGGAGCAGAGAGTCACAGGGCTCATGATTTTTGTACTTATGGGCTCATCTGTCTTTTTGACAAGTATCCTGAAG
Seq A exon
TTTATCCCTATGCCAGTACTTTACGGAGTATTCCTTTACATGGGTGCTTCATCTCTAAAGGGAATTCAG
Seq C2 exon
CTTTTTGACAGGATAAAATTATTCTGGATGCCTGCAAAGCATCAGCCAGATTTTATTTATCTGAGGCATGTTCCTCTTAGAAAAGTCCATCTCTTCACTGTAATTCAGCTGAGTTGTCTTGTACTCCTGTGGATTATAAAGGTTTCAAGAGCTGCCATTGTCTTTCCCATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011120-'25-27,'25-26,26-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTTCTGCTCCAGGGGAA
R:
ATCTGGCTGATGCTTTGCAGG
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]