MmuEX6101575 @ mm10
Exon Skipping
Gene
ENSMUSG00000026904 | Slc4a10
Description
solute carrier family 4, sodium bicarbonate cotransporter-like, member 10 [Source:MGI Symbol;Acc:MGI:2150150]
Coordinates
chr2:62296756-62303977:+
Coord C1 exon
chr2:62296756-62297007
Coord A exon
chr2:62298152-62298220
Coord C2 exon
chr2:62303804-62303977
Length
69 bp
Sequences
Splice sites
3' ss Seq
CTTCTATTGTTCTCTTATAGTTT
3' ss Score
9.62
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAGGTTGTGGCTATCACCTGGATCTGTTAATGGTGGCAGTCATGCTCGGGGTCTGCTCCATTATGGGCCTGCCATGGTTTGTGGCTGCCACAGTTCTCTCCATCACTCATGTCAACAGCCTCAAGCTCGAATCAGAGTGCTCTGCTCCAGGAGAACAACCCAAGTTTCTCGGCATTCGGGAGCAGAGGGTGACCGGGCTCATGATTTTTATTCTTATGGGTTCATCCGTTTTCATGACCAGCATTCTGAAG
Seq A exon
TTTATCCCCATGCCAGTGTTATACGGAGTGTTTCTTTATATGGGTGCTTCGTCTCTCAAAGGAATTCAG
Seq C2 exon
TTATTTGATAGAATAAAGCTCTTCTGGATGCCAGCCAAACATCAACCAGATTTCATCTATCTAAGGCACGTGCCCCTCCGGAAAGTCCATCTCTTCACAGTCATTCAGATGAGTTGTCTCGGCCTTCTGTGGATAATCAAAGTTTCGAGAGCTGCTATTGTCTTTCCTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026904-'35-49,'35-48,36-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCTGCTCCAGGAGAA
R:
TCTGGTTGATGTTTGGCTGGC
Band lengths:
167-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types