RnoEX0082780 @ rn6
Exon Skipping
Gene
ENSRNOG00000005307 | Slc4a10
Description
solute carrier family 4 member 10 [Source:RGD Symbol;Acc:631407]
Coordinates
chr3:48257529-48264896:+
Coord C1 exon
chr3:48257529-48257780
Coord A exon
chr3:48258968-48259036
Coord C2 exon
chr3:48264723-48264896
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTAACTGTTCTCTTACAGTTT
3' ss Score
9.6
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAGGTTGTGGCTATCACCTGGACCTGTTGATGGTGGCAGTCATGCTGGGGGTATGCTCCATTATGGGCCTGCCATGGTTCGTGGCAGCCACTGTCCTCTCCATCACTCATGTGAACAGCCTCAAGCTGGAATCTGAGTGCTCTGCTCCAGGAGAACAACCCAAATTTCTCGGCATTAGGGAACAGAGGGTCACTGGGCTCATGATTTTCATCCTTATGGGTTCATCAGTTTTTATGACCAGCATTCTGAAG
Seq A exon
TTTATCCCCATGCCAGTGTTATATGGAGTGTTTCTTTACATGGGCGCCTCGTCTCTGAAGGGAATTCAG
Seq C2 exon
TTGTTTGATAGAATAAAACTCTTCTGGATGCCAGCCAAACACCAACCAGATTTCATCTATCTAAGGCATGTACCTCTCCGAAAAGTCCATCTCTTCACAGTCATTCAGATGAGTTGTCTCGGCCTTCTGTGGATAATCAAAGTTTCGAGAGCTGCTATTGTCTTTCCTATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005307-'33-41,'33-40,34-41
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAATCTGAGTGCTCTGC
R:
ATCTGGTTGGTGTTTGGCTGG
Band lengths:
178-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]