BtaEX6009527 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015317 | SLC4A10
Description
sodium-driven chloride bicarbonate exchanger [Source:RefSeq peptide;Acc:NP_001033217]
Coordinates
chr2:34599557-34607518:-
Coord C1 exon
chr2:34607267-34607518
Coord A exon
chr2:34606009-34606077
Coord C2 exon
chr2:34599557-34599730
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTCTAATTGTTCTTTTACAGTTT
3' ss Score
9.15
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
AAAGGTTGTGGGTACCATCTGGATCTGTTAATGGTGGCTGTCATGCTGGGTGTGTGCTCCATCATGGGCCTGCCATGGTTTGTGGCTGCCACTGTCCTTTCCATCACTCATGTCAACAGCCTGAAACTGGAATCTGAATGTTCAGCTCCAGGAGAACAACCCAAATTTCTTGGCATTCGGGAGCAAAGAGTTACTGGGCTTATGATTTTCATTCTCATGGGCTCATCAGTCTTTATGACTAGTATTCTGAAG
Seq A exon
TTTATTCCTATGCCAGTGCTATATGGAGTGTTTCTTTATATGGGTGCTTCGTCACTAAAAGGAATTCAG
Seq C2 exon
TTCTTTGATAGAATAAAGCTCTTCTGGATGCCTGCAAAACATCAACCAGATTTTATATATCTAAGGCATGTGCCACTTCGAAAAGTCCATCTCTTCACAGTTATTCAGATGAGTTGCCTCGGCCTTTTGTGGATAATAAAAGTTTCACGAGCTGCTATTGTCTTTCCCATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015317-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(16.1=100)
A:
PF0095516=HCO3_cotransp=FE(4.3=100)
C2:
PF0095516=HCO3_cotransp=PD(6.6=58.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGGCATTCGGGAGCAAA
R:
TGGACTTTTCGAAGTGGCACA
Band lengths:
175-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]