BtaEX6020654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008900 | CELA1
Description
Bos taurus chymotrypsin-like elastase family, member 1 (CELA1), mRNA. [Source:RefSeq mRNA;Acc:NM_174048]
Coordinates
chr5:28622128-28623934:+
Coord C1 exon
chr5:28622128-28622174
Coord A exon
chr5:28622780-28622862
Coord C2 exon
chr5:28623834-28623934
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTCTGCTCCACAAAGGAC
3' ss Score
6.45
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
TGGCAACATGCTGCGCTTGCTGGTGTTCACCTCTCTCGTCCTTTATG
Seq A exon
GACACAGCACCCAGGACTTTCCAGAAACCAACGCCCGGGTAGTTGGAGGGACTGCGGTCTCAAAGAATTCTTGGCCCTCTCAG
Seq C2 exon
ATTTCCCTCCAGTACAAGTCTGGAAGTTCCTGGTATCACACCTGTGGAGGCACCCTCATCAAACAGAAGTGGGTGATGACAGCGGCTCACTGTGTGGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008900-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=50.0)
C2:
PF0008921=Trypsin=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACATGCTGCGCTTGCTG
R:
CTATCCACACAGTGAGCCGCT
Band lengths:
145-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]