GgaEX7012012 @ galGal4
Exon Skipping
Gene
ENSGALG00000004866 | CELA1
Description
chymotrypsin-like elastase family member 1 precursor [Source:RefSeq peptide;Acc:NP_001096672]
Coordinates
chrLGE22C19W28_E50C23:904340-905126:+
Coord C1 exon
chrLGE22C19W28_E50C23:904340-904381
Coord A exon
chrLGE22C19W28_E50C23:904483-904565
Coord C2 exon
chrLGE22C19W28_E50C23:905026-905126
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCACTGTCCCTTTCCCACAGGAT
3' ss Score
13.19
5' ss Seq
CAGGTGGAT
5' ss Score
3.56
Exon sequences
Seq C1 exon
CCATGCTGCAGCTCCTGCTTCTCGCTGCCCTCACGCTGTGTG
Seq A exon
GATCCCATGCAGAGCCAGGCTCCGATGGGATGCAACGTGTGGTCGGGGGGACTGAGGCAAAAACACATGCTTGGCCCTCACAG
Seq C2 exon
ATCTCCCTCCAGTATTACTCCGGAGGCGGCTGGCACCACACCTGCGGAGGGTCCCTCATCCAAAGGAACTGGGTGCTGACAGCAGCCCACTGCGTAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004866-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=50.0)
C2:
PF0008921=Trypsin=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCGCTGCCCTCAC
R:
CTGTCTACGCAGTGGGCTG
Band lengths:
127-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]