MmuEX6056539 @ mm10
Exon Skipping
Gene
ENSMUSG00000023031 | Cela1
Description
chymotrypsin-like elastase family, member 1 [Source:MGI Symbol;Acc:MGI:95314]
Coordinates
chr15:100685134-100687920:-
Coord C1 exon
chr15:100687854-100687920
Coord A exon
chr15:100687125-100687207
Coord C2 exon
chr15:100685134-100685234
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCGCTCTCTGCCCCACAAAGGAC
3' ss Score
4.38
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGGACAGTGGTCTACTCTCTCCACAACATGTTGCGCTTCCTGGTGTTTGCTTCCCTGGTCCTGTGTG
Seq A exon
GACACAGTACCGAGGACGTTCCGGAAACTGACGCCCGCGTGGTTGGAGGGGCTGAAGCCCGGAGGAACTCTTGGCCGTCTCAG
Seq C2 exon
ATTTCCCTCCAGTACCAGTATGGAGGATCATGGCACCACACCTGTGGAGGCACCCTCATCCGAAGCAACTGGGTGATGACCGCTGCTCACTGTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023031-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.179 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(6.0=50.0)
C2:
PF0008921=Trypsin=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACAGTGGTCTACTCTCTCC
R:
CTGTCCACACAGTGAGCAGC
Band lengths:
168-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types