BtaEX6020721 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29357947-29360609:-
Coord C1 exon
chr5:29360548-29360609
Coord A exon
chr5:29359628-29359685
Coord C2 exon
chr5:29357947-29358021
Length
58 bp
Sequences
Splice sites
3' ss Seq
TAAATATTGTTCTTTTACAGGGT
3' ss Score
10.24
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGAACCTCAGGGCCTGATCCAACTACTGTATACGTAGATCTGAAATCATTAAGACATGACAG
Seq A exon
GGTTCGTCTTGTGGAACGGGGTGCCCCCCAGAGTTTGCTCCTCTCAGAGTCTGGAAAG
Seq C2 exon
ATCCTACCTGGAGTGAAAGTAGTTATTGTTAATCCAGAGACCAAAGGGCCCGTTGGAGACTCTCACCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGGGCCTGATCCAACTA
R:
CTCTCCCAGGTGAGAGTCTCC
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]