DreEX6081103 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27435317-27437326:-
Coord C1 exon
chr23:27437265-27437326
Coord A exon
chr23:27437120-27437177
Coord C2 exon
chr23:27435317-27435391
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTCTGTGTTTAGAGT
3' ss Score
10.29
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGCACTGCTGGTCCAGACCCGTCCACTGTTTATGTAGACATGAAGTCCCTCCGTCATGACAG
Seq A exon
AGTCAGGCTGGTGGAGAGAGGAGCTCCTCAGAGTCTGCCGCTGATGGAGTCTGGGACT
Seq C2 exon
ATGCTTCCTGGAGTGAGAGTTATCATTGTGAACCCAGAGACTAAAGGACCACTAGGAGACTCTCATCTAGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'43-38,'43-37,44-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.050 C2=0.080
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTGCTGGTCCAGAC
R:
CCTAGATGAGAGTCTCCTAGTGGT
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]