RnoEX0027954 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141868745-141871612:+
Coord C1 exon
chr7:141868745-141868806
Coord A exon
chr7:141870169-141870226
Coord C2 exon
chr7:141871538-141871612
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTGTCTCTGCTGCAGGGT
3' ss Score
10.42
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GGGACCTCAGGGCCCGATCCAACAACTGTGTATGTGGATCTGAAGTCGCTGAGACATGACAG
Seq A exon
GGTCCGTCTTGTGGAACGAGGTGCCCCCCAGAGTCTCCTGCTTTCTGAGTCTGGAAAG
Seq C2 exon
ATCTTACCTGGAGTGAAAGTAGTTATTGTGAATCCTGAGACCAAAGGACCTGTTGGAGACTCTCACCTGGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'50-51,'50-49,51-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGGCCCGATCCAACAA
R:
CTCTCCCAGGTGAGAGTCTCC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]