DreEX6023072 @ danRer10
Exon Skipping
Gene
ENSDARG00000016348 | dip2bb
Description
DIP2 disco-interacting protein 2 homolog Bb (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-100729-4]
Coordinates
chr6:39542969-39543491:-
Coord C1 exon
chr6:39543430-39543491
Coord A exon
chr6:39543133-39543190
Coord C2 exon
chr6:39542969-39543043
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGGTGTTTGTGTGTTTTAGGGT
3' ss Score
11.54
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GGTACTACAGGACCAGACCCCTCAACTGTGTATGTGGACATGAAGTCTCTCCGACACGACCG
Seq A exon
GGTGAGGTTAGTAGAGCGAGGAGCACCACAGTCGCTTCCACTCATGGAGTCTGGAACA
Seq C2 exon
ATTCTTCCAGGTGTGAGGGTGGTCATAGTCAATCCAGAAACTAGAGGACCGCTAGGGGACTCTCACCTGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016348-'37-40,'37-39,38-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTACTACAGGACCAGACCCC
R:
CCAGGTGAGAGTCCCCTAGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]