GgaEX1019788 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:156844-157503:-
Coord C1 exon
chrLGE22C19W28_E50C23:157442-157503
Coord A exon
chrLGE22C19W28_E50C23:157263-157320
Coord C2 exon
chrLGE22C19W28_E50C23:156844-156918
Length
58 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTCTGTAACTTCAGAGT
3' ss Score
6.68
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGAACCTCTGGGCCTGATCCCACCACAGTGTATGTAGATCTGAAATCCTTGAGACATGACAG
Seq A exon
AGTACGTCTAGTGGAAAGGGGAGCTCCACAAAGTCTGCTGCTTTCAGAATCTGGGAAG
Seq C2 exon
ATTTTACCTGGAGTCAAGGTGGTTATTGTTAATCCGGAGACAAAAGGGCCTCTGGGAGATTCTCATCTTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'60-52,'60-51,62-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.2=100)
A:
PF0050123=AMP-binding=FE(4.0=100)
C2:
PF0050123=AMP-binding=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTCTGGGCCTGATCC
R:
CAAGATGAGAATCTCCCAGAGGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]