BtaEX6023985 @ bosTau6
Exon Skipping
Description
Bos taurus killer cell lectin-like receptor subfamily K, member 1 (KLRK1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075139]
Coordinates
chr5:100041903-100046106:+
Coord C1 exon
chr5:100041903-100042010
Coord A exon
chr5:100045783-100045875
Coord C2 exon
chr5:100046071-100046106
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTGTCTTTGACAGCAT
3' ss Score
9.99
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
AGATGAGTGAATCTCATACTTATGCCAGTGAACGAGTAAAGTCTTGTGCTTCTAGACAATGGCAAAAGAGAACATGTACATTAACCACAAGCCAACGTGGAGAAAACC
Seq A exon
CATCTCCATTTGTCCTTGCCAGATCCATTGCTATAGCCATGGGGATTCGTTTCATTGGAATGTTAATAATATGCAGTGCCATGATCATAACTT
Seq C2 exon
CATTATTCAACCAAGAAGCTCCAATTTCTTTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004917-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAATCTCATACTTATGCCAGTGA
R:
TCAAAGAAATTGGAGCTTCTTGGT
Band lengths:
136-229
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]