MmuEX0025832 @ mm10
Exon Skipping
Gene
ENSMUSG00000030149 | Klrk1
Description
killer cell lectin-like receptor subfamily K, member 1 [Source:MGI Symbol;Acc:MGI:1196250]
Coordinates
chr6:129616297-129617521:-
Coord C1 exon
chr6:129617483-129617521
Coord A exon
chr6:129616669-129616773
Coord C2 exon
chr6:129616297-129616332
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCCTGTTTTTCTTTGACAGTAT
3' ss Score
8.66
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTATCATAAGAGGAAGATACCCTATAGAAAAACTCAAAA
Seq A exon
TATCTCCAATGTTCGTTGTTCGAGTCCTTGCTATAGCCTTGGCAATTCGATTCACCCTTAACACATTGATGTGGCTTGCCATTTTCAAAGAGACGTTTCAGCCAG
Seq C2 exon
TATTGTGCAACAAGGAAGTCCCAGTTTCCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030149_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types