HsaEX6065167 @ hg38
Exon Skipping
Gene
ENSG00000213809 | KLRK1
Description
killer cell lectin like receptor K1 [Source:HGNC Symbol;Acc:HGNC:18788]
Coordinates
chr12:10379447-10387010:-
Coord C1 exon
chr12:10386903-10387010
Coord A exon
chr12:10379700-10379792
Coord C2 exon
chr12:10379447-10379482
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGTCTTTTTTCTTTGACAGCAT
3' ss Score
9.23
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
AGATGAGTGAATTTCATAATTATAACTTGGATCTGAAGAAGAGTGATTTTTCAACACGATGGCAAAAGCAAAGATGTCCAGTAGTCAAAAGCAAATGTAGAGAAAATG
Seq A exon
CATCTCCATTTTTTTTCTGCTGCTTCATCGCTGTAGCCATGGGAATCCGTTTCATTATTATGGTAACAATATGGAGTGCTGTATTCCTAAACT
Seq C2 exon
CATTATTCAACCAAGAAGTTCAAATTCCCTTGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213809-'4-10,'4-7,10-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTGATTTTTCAACACGATGGC
R:
AGAAGCCTGGCTCTCATACCA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains