BtaEX6023987 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046389 | KLRD1
Description
Bos taurus killer cell lectin-like receptor subfamily D, member 1 (KLRD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002890]
Coordinates
chr5:100098331-100100154:-
Coord C1 exon
chr5:100100062-100100154
Coord A exon
chr5:100099877-100099927
Coord C2 exon
chr5:100098331-100098375
Length
51 bp
Sequences
Splice sites
3' ss Seq
TTTCTAATAATTTCTTCCAGCAC
3' ss Score
7.6
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
CTTTTCGGACCACTGCATGGAGGTTGATCTCTGGGGTCTTAGGAGTAATATGCCTTGTGTTGATGGCTGCTTTGGGAGTTCTGTTAAAAAATT
Seq A exon
CACTTACTAAACGAAGTGTTCAGCCTGGACCCTCTGCAGATCTTCAGGAAG
Seq C2 exon
AATATAATCTCCATGAAGAAGAAGAGTCATGTCTGGGTTGTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046389-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCATGGAGGTTGATCTCT
R:
ACAACCCAGACATGACTCTTCT
Band lengths:
124-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]