MmuEX6007375 @ mm9
Exon Skipping
Gene
ENSMUSG00000030165 | Klrd1
Description
killer cell lectin-like receptor, subfamily D, member 1 [Source:MGI Symbol;Acc:MGI:1196275]
Coordinates
chr6:129543508-129545579:+
Coord C1 exon
chr6:129543508-129543600
Coord A exon
chr6:129543746-129543808
Coord C2 exon
chr6:129545428-129545579
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTATAATAATTTCTTATAGCAT
3' ss Score
6.05
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TTTCTAGGATCACTCGGTGGAGACTGATGTCTGTCATCTTTGGAATAAAATGTCTTTTCTTGATGGTTACTTTGGGAGTTTTGCTGATAAATT
Seq A exon
CATTTACTATACAGAACATTCAATCAACACCTTCTCCAACCACCACTGTAGAATTCCAGGAAG
Seq C2 exon
TTTCTGAATGCTGTGTTTGCCTGGACAAGTGGGTTGGGCATCAGTGCAATTGTTACTTTATTTCCAAAGAAGAAAAGTCTTGGAAAAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030165-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054176=Peptidase_C41=PU(0.1=0.0)
A:
PF054176=Peptidase_C41=PU(23.3=90.9)
C2:
PF054176=Peptidase_C41=FE(58.1=100),PF0005916=Lectin_C=PU(27.6=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCACTCGGTGGAGACTG
R:
CTGATGCCCAACCCACTTGTC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: