MmuEX6007375 @ mm10
Exon Skipping
Gene
ENSMUSG00000030165 | Klrd1
Description
killer cell lectin-like receptor, subfamily D, member 1 [Source:MGI Symbol;Acc:MGI:1196275]
Coordinates
chr6:129593490-129595561:+
Coord C1 exon
chr6:129593490-129593582
Coord A exon
chr6:129593728-129593790
Coord C2 exon
chr6:129595410-129595561
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCTATAATAATTTCTTATAGCAT
3' ss Score
6.05
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
TTTCTAGGATCACTCGGTGGAGACTGATGTCTGTCATCTTTGGAATAAAATGTCTTTTCTTGATGGTTACTTTGGGAGTTTTGCTGATAAATT
Seq A exon
CATTTACTATACAGAACATTCAATCAACACCTTCTCCAACCACCACTGTAGAATTCCAGGAAG
Seq C2 exon
TTTCTGAATGCTGTGTTTGCCTGGACAAGTGGGTTGGGCATCAGTGCAATTGTTACTTTATTTCCAAAGAAGAAAAGTCTTGGAAAAGAAGCAGAGATTTCTGTGCTTCGCAGAATTCCAGCCTTCTTCAGCCCCAATCCAGAAATGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030165-'1-5,'1-1,2-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=PU(43.1=87.5)
A:
PF083915=Ly49=FE(32.3=100)
C2:
PF0005916=Lectin_C=PU(27.6=52.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCACTCGGTGGAGACTG
R:
CTGATGCCCAACCCACTTGTC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types