BtaEX6024039 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101184202-101185868:+
Coord C1 exon
chr5:101184202-101184304
Coord A exon
chr5:101185220-101185296
Coord C2 exon
chr5:101185726-101185868
Length
77 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTTTTTATTTTCCAGATG
3' ss Score
12.5
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GTTTCAGATACAGCAAAGAGTTTCACCTTCTCTGTTGAGGAAATCAACCATGTGGCAAACATTCAGCCAGCCCCAGTCATTGTCTACGATTATTATGAAAAAG
Seq A exon
ATGAATATGCCCATGCTTCTTACAATATCAACAGTGTTCCTGTTTCTCAGTGAGACAAAACAAAATACACAAAAAAG
Seq C2 exon
GTAGAAAACAATTTACTTTGAATGAACTCATTCTCCTGTCTCAAACCTGGAAGAAATCCATGAACCACCTCACATTCTGAATAGAGTTCACTCTGCTATGAGTTCTTATCAGAGTTCGTTTCAATAAATGCTGTGATTTTTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'35-34,'35-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(38.6=100)
A:
PF076779=A2M_recep=PD(8.0=38.9)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAGAGTTTCACCTTCTCTGT
R:
CAGAATGTGAGGTGGTTCATGGA
Band lengths:
171-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]