MmuEX6007319 @ mm9
Exon Skipping
Gene
ENSMUSG00000047228 | BC048546
Description
cDNA sequence BC048546 [Source:MGI Symbol;Acc:MGI:3039594]
Coordinates
chr6:128489840-128491121:-
Coord C1 exon
chr6:128491022-128491121
Coord A exon
chr6:128490280-128490367
Coord C2 exon
chr6:128489840-128490037
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTTTTATTTTCCAGGTG
3' ss Score
12.09
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
Exon sequences
Seq C1 exon
GTTCCCAAGGAAGCAACCAGCCTCACCTTCTCCATTGAACAAACTAACCATGTGGCCAATATCCAGCCAGCCCCAGTCACGGTCTACAGCTATGAAAAAG
Seq A exon
GTGAATATGCTTTTGATTCTTACAACATCAATAGCATTTCGGATTCCCAATAAAACAAAGAAGCGCACAGAAAAAAAGAAAAAAAAAA
Seq C2 exon
GTATGAGACTATTTCTTTGAATAAACTGTTCTCCTGGTCACCATCCTACCAAGAGCCTGATCAAGCACCTCCCATCCTGAAGACTCTCCCATCACAATGACTTCTTGTCAGCTTCACTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCATTAAATGGCATCATTTTAAGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047228-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(37.9=100)
A:
PF076779=A2M_recep=PD(8.0=38.9)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGCCTCACCTTCTCCAT
R:
TTCAGGATGGGAGGTGCTTGA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: