HsaEX1026784 @ hg38
Exon Skipping
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31111657-31113083:-
Coord C1 exon
chr12:31112981-31113083
Coord A exon
chr12:31112112-31112288
Coord C2 exon
chr12:31111657-31111809
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCTTTATTTTTTCAGAAG
3' ss Score
9.01
5' ss Seq
CTGGTACTT
5' ss Score
4.74
Exon sequences
Seq C1 exon
GTTTTTGGTCGAGCAGACAGTTTCACTTTTTCTGCTGAGCAGAGCAACCTTGTGTTCAACATTCAGCCAGCCCCAGGCATGGTCTACGATTAGTACGAAAAAG
Seq A exon
AAGAATATGCCCTAGCTTTTTACCACATCAACAGTAGTTCAGTTTCCGAGTGAGACAAAGCAATTACTGGAAGAAGTAAAGAAATTTTATTACGTCATAAACCATTGAAAACACATCTAGTAAGAAAATGAAAACCTGAATAAGATAGGACAATAGTTGAAGAAAGAAAAGTCTCTG
Seq C2 exon
GTGGAGAAGCATTTCTTTTAACAAACTGATTCTTCTGTATCAAACCTGGAAAAAAATCATGAACCATCTGACATCGTGAACAGTCTGCAGTGGGCTATGGTTTCTTGACAAGTCTTATTTCCTTATCATCCCATTAAATGTTGTCATTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359_MULTIEX2-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(38.2=93.5)
A:
NA
C2:
PF076779=A2M_recep=PD(4.7=40.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCAGACAGTTTCACTTT
R:
TGACAACATTTAATGGGATGATAAGG
Band lengths:
241-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains