HsaINT1025949 @ hg38
Intron Retention
Gene
ENSG00000177359 | OVOS2
Description
NA
Coordinates
chr12:31111657-31113083:-
Coord C1 exon
chr12:31112981-31113083
Coord A exon
chr12:31111810-31112980
Coord C2 exon
chr12:31111657-31111809
Length
1171 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
AATGATGTTTTAAATCCCAGGTG
3' ss Score
7.21
Exon sequences
Seq C1 exon
GTTTTTGGTCGAGCAGACAGTTTCACTTTTTCTGCTGAGCAGAGCAACCTTGTGTTCAACATTCAGCCAGCCCCAGGCATGGTCTACGATTAGTACGAAAAAG
Seq A exon
GTAGGCAAGCAACAGCCATGCCCTAAGGTTATTGAATGTGGTGTTTATATCTAACATTCCCTGAGCTACTAAACTTTCCAAAATCAACCTCTGTCTTCACAGAGTAAACAATAAATGGCATTACTTTGTGTTCTGGTTTCTTTATCCCATGATGTGTCTTCTGACTGAACCCATTTTCCAGTTACCAGAGTTTTTCAACACCAGAATCCTTGCAATATAACCTGACAGGGCTCCACTTGAACTTGAAATACAAGCCACACTAAGCTTCCAGGTCTTTTTGTTATTGTCATTGTTGTTCATGCTAAGACTGACTGTTCCAAGCTACTTCTGTGGACTTTGACTTAAAAAGAGGAGTGGGGAATATTCTGAAATGTTAACTTAAAAATTTGATAGATTAATTTCTAAAACATATACTAAAATGTTGTAGAGACCATACAACTGTTCCCTGGAAGGTTGGTACTATTTATTTCTTGTTGAATGCTGTGTGAAGTTTGTGGAGTGTTTGAATTCTGTCTCTATCATTTACTAATAGAATATATTTCATCAAGTGTCTTAAATATTATTAGCATATTTCTGCATAATGTATAAAATGGGAAAGTAATTGTCTCTATTTCAAAATTATTGGAAGGATTAGATCTAATGTGCTTATATCATCTATTTAATAAAAATACATGTTCCCTTTATTTTTTCAGAAGAATATGCCCTAGCTTTTTACCACATCAACAGTAGTTCAGTTTCCGAGTGAGACAAAGCAATTACTGGAAGAAGTAAAGAAATTTTATTACGTCATAAACCATTGAAAACACATCTAGTAAGAAAATGAAAACCTGAATAAGATAGGACAATAGTTGAAGAAAGAAAAGTCTCTGGTACTTCATTAGACTTGTGTAGCTGTGTACTGCATGAGTAATCTGATAATCATTAAGATTATATTAATTTCTTTAAAAATAGCTTTAAAGAATTCACAGCTATATATGTACCTTTTATAAATCTCTCATTTTTGTTTTGTAAGTTGACAGGTCAGTAAAAATTTAGGCATATATATTTGTACATATGTGTGTATATGTATATACATGTCTATGTGCCTATATATGCATGTTTTTATTTCTAAATATCTATTTATATATACATACAAATGTGTTTATTGTTTAAATGATGTTTTAAATCCCAG
Seq C2 exon
GTGGAGAAGCATTTCTTTTAACAAACTGATTCTTCTGTATCAAACCTGGAAAAAAATCATGAACCATCTGACATCGTGAACAGTCTGCAGTGGGCTATGGTTTCTTGACAAGTCTTATTTCCTTATCATCCCATTAAATGTTGTCATTTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177359:ENST00000398963:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(38.2=93.5)
A:
NA
C2:
PF076779=A2M_recep=PD(4.7=40.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGCAGACAGTTTCACTTT
R:
TGACAACATTTAATGGGATGATAAGG
Band lengths:
241-1412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains