BtaEX6024060 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005243 | OVOS2
Description
Bos taurus ovostatin 2 (OVOS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001164024]
Coordinates
chr5:101149587-101151852:+
Coord C1 exon
chr5:101149587-101149698
Coord A exon
chr5:101151252-101151361
Coord C2 exon
chr5:101151694-101151852
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTTCATTTCTTGCAGGTG
3' ss Score
12.25
5' ss Seq
ACTGTGGGT
5' ss Score
1.96
Exon sequences
Seq C1 exon
TTGAAAAATGGTTGTGTTTCTCAAATTGTAAATACAAAAGTCTTCCAACTCTACCGTTCTGGACTTTTCATGTCATTTTATATCACCACAACTGTTACAGAAATTGGGACAG
Seq A exon
GTGTGCAGATCAGCGAAAAGTCTTCTATTTTTATCACTCCAGTGCTTGGAAGTGTGAGCTTCGAGAACATGGACCCTTTCTATAGAAGAGGAATTTCTTATTTTGGAACT
Seq C2 exon
CTTAAATTTTCCGGCCCTAATAATGTTCCAGTGGTGAACAAGTTATTGCAGTTGGAGCTTAATGACAGATTGGTAGGAAACTACACCACAGATGAGAATGGTGAAGCTCAGTTTTCCATTGATACTTCTGATATATTTGATCCGGAGTTTCGTCTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005243-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATACAAAAGTCTTCCAACTCTACC
R:
TTTCAGACGAAACTCCGGATCA
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]