RnoEX6015266 @ rn6
Exon Skipping
Gene
ENSRNOG00000007247 | A2ml1
Description
alpha-2-macroglobulin-like 1 [Source:RGD Symbol;Acc:1565709]
Coordinates
chr4:161896027-161897025:-
Coord C1 exon
chr4:161896914-161897025
Coord A exon
chr4:161896518-161896627
Coord C2 exon
chr4:161896027-161896185
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTTTCATCATTTCTTACAGGTG
3' ss Score
10.54
5' ss Seq
ACTGTAGGT
5' ss Score
4.15
Exon sequences
Seq C1 exon
CTGAAAGATGGCTGTGCTTCTTACATTGTCAATACGAAAGTCTTCCAGCTGTACCGCTCTGGGTTGTTCATGACGTTGAATATCAACGGAGTCATTACAGAATCTGGAACAG
Seq A exon
GTGTACAGATCAGTAAGACACACTCAGTTTTTATCACCTCAGTGCTTGGCACTGTCAGCTTCGAGAACATGGACTCTTTCTACAGGAGAGGGATCCCTTATTTTGGAACT
Seq C2 exon
CTTAAATTTTCTGGCCCCAATAACACACCGATGGTGAACAAGCTTTTGCAACTGGAGCTCGATGGCAAACCTCTAGGGAATTACACCACAGATGAGAAGGGGGAAGCTCAATTTTCCATTAACACTTCAGAGATATTCGAGGCACAGATGAGCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007247-'13-9,'13-8,14-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGTGCTTCTTACATTGTCA
R:
AAGCTCATCTGTGCCTCGAAT
Band lengths:
258-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]