GgaEX6003313 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NEW8]
Coordinates
chr1:75843763-75845079:-
Coord C1 exon
chr1:75844959-75845079
Coord A exon
chr1:75844607-75844716
Coord C2 exon
chr1:75843763-75843921
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTTCTGGGTGTGTCTCACAGGTA
3' ss Score
9.64
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTGGAAAACAATGGTTGTCTCAGCACTGTTGTCTCCACCAAAACTTTTCAGTTGTACCGCAGTTATGCCAGGATGTATGCCAGCTTCAACATAGAAACCATCGTCACTGAAAATGGGACAG
Seq A exon
GTATCCAGATGAAAAACTATGACTACGTTGCAGTCAGCCAAGAAAATGACAGAGTGATGTTCAGGAACATGGATCAGTACTACAGAAGGGGAATTCCTTACTTTGGTGAG
Seq C2 exon
ATCACTGTGACAAATGCAGATGGCAAGCCTGTTCCCAGTAGGGTTGTTGTGCTGGAGGTCAATGGAGAATACCAGGCCAACTATACCACTGATGAGAATGGCACGGCAGCCTTTTCCCTTGACACGTCCAACTTCTTTAATCCCACTGTTAAGCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011930-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0236911=Big_1=PU(1.6=2.7)
C2:
PF0236911=Big_1=FE(83.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTGTCTCAGCACTGTTGT
R:
AGAAGTTGGACGTGTCAAGGG
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]