BtaEX6024100 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101334297-101341150:+
Coord C1 exon
chr5:101334297-101334477
Coord A exon
chr5:101339988-101340211
Coord C2 exon
chr5:101340932-101341150
Length
224 bp
Sequences
Splice sites
3' ss Seq
AATCTTTTTCTCACATCCAGATA
3' ss Score
8.58
5' ss Seq
CAGGTCCGT
5' ss Score
6.47
Exon sequences
Seq C1 exon
CACCCTGTCGTCCGCAATGCCCTGTTCTGCCTGGACTCAGCCTGGAAGTCAGCCAAGGAAGGATCCCAAGGCAGCCACGTCTACACCAAGGCACTGTTGGCCTATGCCTTTGCCCTGGCGGGTAACCAGGAAAGGAGGACAGAGGTACTGACGTCACTGTATGAGGAAGCCGTGAAGGAAG
Seq A exon
ATAATACCATCCACTGGACACGACCTCAGAAACCCAGGTTGCTCACGGAGGACATTTACCAACCCAGGGCTCCGTCTGCGGAGGTGGAGATGACGGCCTACGTGATCCTTGCTCACGTCACGGCCCAGCCGGCCCCGAACCCAGAGGACCTCAAACGTGCCACGAGCATCGTGAAGTGGATCTCAAAGCAGCAGAATTGCCAGGGGGGCTTCTCCTCCACCCAG
Seq C2 exon
GACACAGTGGTAGCTCTCCACGCCTTGTCCAGATACGGAGCAGCCACTTTCACCAGCGCTAGGAAGGCTGCACAGGTGACCATCCAGTCTTCAGGGACATTTTCCACAAAATTCCAAGTGGAAAACAGCAACCGCCTGTTACTACAGCAGGTTTCATTGCCAGAGGTGCCTGGAGAGTACAGCATGTCAGTCACAGGAGAAGGATGTGTTTACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'28-36,'28-35,29-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.147 C2=0.000
Domain overlap (PFAM):
C1:
PF076789=A2M_comp=FE(23.3=100)
A:
PF076789=A2M_comp=FE(28.8=100)
C2:
PF076789=A2M_comp=PD(5.1=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGTCAGCCAAGGAAGGA
R:
CCTCTGGCAATGAAACCTGCT
Band lengths:
305-529
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]