BtaEX6024208 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019669 | CD163
Description
Bos taurus CD163 molecule (CD163), mRNA. [Source:RefSeq mRNA;Acc:NM_001163413]
Coordinates
chr5:102245937-102249090:+
Coord C1 exon
chr5:102245937-102245967
Coord A exon
chr5:102247327-102247413
Coord C2 exon
chr5:102248770-102249090
Length
87 bp
Sequences
Splice sites
3' ss Seq
TCTTTTATTGCTTTCCACAGGTT
3' ss Score
11.29
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGGTGCTACATGACAACTCTGGATCTGCTG
Seq A exon
GTTTTAAAAGGTGTTCTGTCCACTTCGGTCCCTTCACTCTTGCTGTGGTCTCAGTTCTCTATGCCTGTTTGATCACCAGTGCTCTTG
Seq C2 exon
GGGGAACAGACAAGGAACTGAGGCTGGTAGCTGGTCAAACCAAGTGTTCTGGGAGAGTGGAGGTGAAAGTCCAGGAAGAGTGGGGAACTGTGTGCAACACCGGCTGGGACTTGGCTGCCGTCTCTGTCGTTTGTAAGCAGCTGGGATGTCCGTCTGTCATCAAAGCCACAGGATGGACCAATTCCAGTGCAGGCACTGGGCGCATTTGGATGGATCATGTGTCTTGTCGAGGCAATGAATCAGCTCTCTGGGACTGCAAACATGAGGGGTGGGGAAAGCATAACTGTACTCACCAACAGGATGTAGGAGTCACCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019669-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTACATGACAACTCTGG
R:
TCCCAGCTGCTTACAAACGAC
Band lengths:
176-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]