RnoEX6015017 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156752082-156754781:+
Coord C1 exon
chr4:156752082-156752235
Coord A exon
chr4:156753247-156753330
Coord C2 exon
chr4:156754461-156754781
Length
84 bp
Sequences
Splice sites
3' ss Seq
CCTGCCCCCTTGTTTCACAGGTT
3' ss Score
11.55
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAGAGTGAGATGATTATCTCCCTCCGTGGTCGTCCACTTTCTTTGGAGAACACATCTATGAAATAGTAAAAGGAGACACACGAGCCATCGGAATCATCAGACTTTGGAATGGGCAAGAACAGAATGGTTCTTCTTGGAGGTGCTGGGTCTCCCG
Seq A exon
GTTATAAAGGATTTGTCCACCTAGGTTTCTTTGTTGTGGCTGTGAGCTCACTTCTCAGCGTCTCTGCTGTCACTCAGGCTCCTG
Seq C2 exon
AAGGAAGGAAGAAGGAACTGAGACTGGCCGGCGGTGAAAACAACTGTAGTGGGAGAGTGGAGCTCAAGATCCACGAGAAGTGGGGCACAGTGTGCGGTAACGGCTGGAGCATGAACGAGGTGTCCGTGGTTTGCCAGCAGCTAGGATGCCCAACTTTGATTAAAGCCCCGGGATGGGCTAACGCCAGCGCGGGCTCTGGGGACATCTGGATGGACAAGGTTTCTTGCACAGGGAATGAGTCAGCTCTTTGGGACTGCAAACATGAGGGGTGGGGAAAGCACAACTGTACCCATGAACAAGATGCTGGAGTGACCTGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=90.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTTCTTGGAGGTGCTGGG
R:
CATCCTAGCTGCTGGCAAACC
Band lengths:
176-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]