HsaEX6064973 @ hg38
Exon Skipping
Gene
ENSG00000177575 | CD163
Description
CD163 molecule [Source:HGNC Symbol;Acc:HGNC:1631]
Coordinates
chr12:7501139-7503893:-
Coord C1 exon
chr12:7503645-7503893
Coord A exon
chr12:7502478-7502564
Coord C2 exon
chr12:7501139-7501462
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTTCTTTTTCACAGACT
3' ss Score
11.49
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATTGAAGAAAACATGAGTATGAAATGGAACCTCAGCTCTTTCAATGACTTCCCTTTTTGAGTTGACTCCGCCTCCATATGTAGCCTTTTCATTTTCATGAAAGTGAAGTGATTTTTAGAATTCTTAGTTGTTTTCTTTAGAAGAACATTTCTAGGGAATAATACAAGAAGATTTAGGAATCATTGAAGTTATAAATCTTTGGAATGAGCAAACTCAGAATGGTGCTACTTGAAGACTCTGGATCTGCTG
Seq A exon
ACTTCAGAAGACATTTTGTCAACTTGAGTCCCTTCACCATTACTGTGGTCTTACTTCTCAGTGCCTGTTTTGTCACCAGTTCTCTTG
Seq C2 exon
GAGGAACAGACAAGGAGCTGAGGCTAGTGGATGGTGAAAACAAGTGTAGCGGGAGAGTGGAAGTGAAAGTCCAGGAGGAGTGGGGAACGGTGTGTAATAATGGCTGGAGCATGGAAGCGGTCTCTGTGATTTGTAACCAGCTGGGATGTCCAACTGCTATCAAAGCCCCTGGATGGGCTAATTCCAGTGCAGGTTCTGGACGCATTTGGATGGATCATGTTTCTTGTCGTGGGAATGAGTCAGCTCTTTGGGATTGCAAACATGATGGATGGGGAAAGCATAGTAACTGTACTCACCAACAAGATGCTGGAGTGACCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177575-'0-5,'0-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=90.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTACTTGAAGACTCTGGA
R:
TGGACATCCCAGCTGGTTACA
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains