BtaEX6026227 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11655208-11655910:+
Coord C1 exon
chr4:11655208-11655315
Coord A exon
chr4:11655660-11655713
Coord C2 exon
chr4:11655803-11655910
Length
54 bp
Sequences
Splice sites
3' ss Seq
CTGGTGTGATGTCTTCACAGGGC
3' ss Score
8.34
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGTGAACCTGGCCCCCTCGGCATCGCAGGCCCACCTGGGGCCCGTGGTCCCCCTGGTAATGTCGGTAATCCTGGCGTCAATGGTGCTCCTGGTGAAGCCGGTCGTGAC
Seq A exon
GGCAACCCTGGGAATGACGGTCCCCCAGGCCGCGATGGTCAACCCGGACACAAG
Seq C2 exon
GGGGAGCGTGGTTACCCCGGTAACGCAGGTCCTGTTGGTGCTGCCGGTGCTCCTGGCCCTCAAGGCCCTGTGGGTCCCGTTGGTAAACACGGAAACCGTGGTGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'47-48,'47-47,48-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(47.3=100)
A:
PF0139113=Collagen=FE(23.0=100)
C2:
PF0139113=Collagen=PD(21.6=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCCTGGCGTCAATGGTGC
R:
TTCCGTGTTTACCAACGGGAC
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]