GgaEX0028394 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23550441-23566312:+
Coord C1 exon
chr2:23550441-23550494
Coord A exon
chr2:23563837-23563890
Coord C2 exon
chr2:23566066-23566312
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTTAAATGGTACTTCAACAGGGC
3' ss Score
5.96
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGTCTCCCAGGTCAACCTGGAAGCCCAGGTCCTGCTGGCAAAGAAGGTCCTGTT
Seq A exon
GGCAATCCTGGAAATGATGGTCCTCCAGGCCGTGATGGTGCTCCTGGCTTCAAG
Seq C2 exon
GGCCCTCCTGGCCCTCCTGGTCCCCCTGGCCCCCCTGGTCCCAATGGTGGCGGATATGAAGTTGGCTTTGATGCAGAATACTACCGGGCTGATCAGCCTTCTCTCAGACCCAAGGATTATGAAGTTGATGCCACTCTGAAAACATTGAACAACCAAATTGAGACCCTGCTGACCCCAGAAGGCTCCAAAAAGAACCCGGCTCGCACCTGCCGTGACCTCAGACTTAGCCACCCAGAATGGAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX1-42/48=23-48
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.880
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.5=100),PF0139113=Collagen=PU(11.6=44.4)
A:
PF0139113=Collagen=PD(5.6=27.8)
C2:
PF0139113=Collagen=PD(31.3=25.3),PF0141013=COLFI=PU(12.3=32.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCAAAGAAGGTCCTGTT
R:
TCCTTGGGTCTGAGAGAAGGC
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]