BtaEX6026229 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11653303-11655315:+
Coord C1 exon
chr4:11653303-11653464
Coord A exon
chr4:11654435-11654542
Coord C2 exon
chr4:11655208-11655315
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTATTGTTGTTTAGGGG
3' ss Score
7.61
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GGTATCTCTGGCCCCCCTGGCCCCCCTGGTCCTGCTGGTAAAGAAGGGCTTCGTGGGCCTCGTGGTGACCAAGGTCCAGTTGGTCGAAGTGGAGAGACAGGTGCCTCTGGCCCTCCTGGCTTTGTTGGTGAGAAGGGTCCCTCTGGAGAGCCTGGTACTGCT
Seq A exon
GGGCCTCCTGGAACCCCAGGTCCACAAGGCCTTCTTGGTGCTCCTGGTTTTCTGGGTCTCCCAGGCTCTAGAGGTGAGCGTGGTCTACCAGGTGTCGCTGGATCTGTG
Seq C2 exon
GGTGAACCTGGCCCCCTCGGCATCGCAGGCCCACCTGGGGCCCGTGGTCCCCCTGGTAATGTCGGTAATCCTGGCGTCAATGGTGCTCCTGGTGAAGCCGGTCGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'44-46,'44-45,46-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(2.7=5.6)
C2:
PF0139113=Collagen=FE(47.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTCCTGCTGGTAAAGA
R:
TCACGACCGGCTTCACCAG
Band lengths:
246-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]