MmuEX6002781 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4533742-4535488:+
Coord C1 exon
chr6:4533742-4533903
Coord A exon
chr6:4534581-4534688
Coord C2 exon
chr6:4535381-4535488
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTATTTTTTCTCTCATCTAGGGA
3' ss Score
10.93
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGTATTGCTGGCCCCCCTGGCCCCCCTGGTGCTGCTGGAAAGGAAGGGATTCGTGGTCCCCGTGGCGACCAAGGTCCAGTTGGCCGAACTGGAGAAACAGGTGCATCTGGACCCCCTGGATTTGTTGGTGAAAAGGGTCCCTCTGGAGAACCTGGTACCGCA
Seq A exon
GGAGCCCCTGGTACCGCAGGTCCTCAGGGTCTTCTTGGTGCTCCCGGTATTCTGGGTCTCCCTGGCTCTAGAGGTGAACGTGGTCTGCCAGGTATTGCTGGTGCTCTG
Seq C2 exon
GGTGAACCTGGTCCTCTGGGCATCTCAGGCCCTCCTGGTGCCCGTGGTCCCCCTGGTGCTGTGGGCAGCCCTGGAGTTAATGGTGCCCCTGGTGAAGCTGGTCGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'64-63,'64-61,66-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(2.7=5.6)
C2:
PF0139113=Collagen=FE(46.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGCTGCTGGAAAGGAAG
R:
ATCACGACCAGCTTCACCAGG
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types