BtaEX6026239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11644258-11646801:+
Coord C1 exon
chr4:11644258-11644311
Coord A exon
chr4:11645296-11645340
Coord C2 exon
chr4:11646703-11646801
Length
45 bp
Sequences
Splice sites
3' ss Seq
TATTCCCATGTTTTGCCTAGGGT
3' ss Score
6.36
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGTCTGCCTGGCCCTGCAGGCACAGCTGGTGAAGCTGGCAAACCAGGAGAAAGG
Seq A exon
GGTATCCCTGGTGAATTTGGTCTCCCTGGCCCTGCTGGTGCAAGA
Seq C2 exon
GGGGAGCGGGGGCCCCCAGGTGAAAGTGGTGCTGCTGGGCCTACTGGGCCTATTGGAAGCCGAGGTCCTTCTGGACCCCCAGGGCCTGATGGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAAGCTGGCAAACCA
R:
CTTGTTTCCATCAGGCCCTGG
Band lengths:
128-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]