MmuEX6002788 @ mm10
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4524876-4527153:+
Coord C1 exon
chr6:4524876-4524929
Coord A exon
chr6:4525882-4525926
Coord C2 exon
chr6:4527055-4527153
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACTCTTGTGTTTTTACCTAGGGT
3' ss Score
9.23
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GGTCTCCCTGGTCCCTCAGGTACTACTGGAGAAGTTGGCAAGCCCGGAGAAAGG
Seq A exon
GGTCTTCCTGGTGAATTCGGTCTCCCTGGTCCTGCTGGTCCAAGA
Seq C2 exon
GGAGAACGTGGTACCCCGGGTGAGAGTGGAGCTGCTGGCCCTTCTGGTCCTATTGGAAGCCGAGGTCCCAGTGGAGCCCCAGGGCCTGATGGAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'48-52,'48-46,49-52=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100),PF0139113=Collagen=FE(20.2=100)
A:
PF0139113=Collagen=PD(9.1=40.0),PF0139113=Collagen=FE(16.7=100)
C2:
PF0139113=Collagen=FE(38.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCCCTCAGGTACTACTGG
R:
CTTGTTTCCATCAGGCCCTGG
Band lengths:
145-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types