GgaEX0028385 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23723840-23736736:+
Coord C1 exon
chr2:23723840-23723893
Coord A exon
chr2:23724734-23724778
Coord C2 exon
chr2:23736629-23736736
Length
45 bp
Sequences
Splice sites
3' ss Seq
ATCCATCTCCTTTCTTCTAGGGT
3' ss Score
9.96
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGTCTGCCAGGTCCCTCCGGTCCAGCTGGTGAAGCTGGCAAACCAGGCGAAAGG
Seq A exon
GGTCTCCATGGTGAATTTGGTGTCCCTGGTCCTGCTGGCCCAAGG
Seq C2 exon
GGTCCTCCTGGTCCTTCTGGTCCTCCTGGTAAGGATGGTCGCAATGGTCTCCCTGGACCCATTGGCCCTGCTGGTGTACGTGGATCTCATGGTAGCCAAGGCCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-21/39=20-39
Average complexity
C3
Mappability confidence:
94%=100=91%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(25.8=100)
A:
PF0139113=Collagen=PD(7.6=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGAAGCTGGCAAACCA
R:
GGCCTTGGCTACCATGAGATC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]