BtaEX6026253 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013472 | COL1A2
Description
Bos taurus collagen, type I, alpha 2 (COL1A2), mRNA. [Source:RefSeq mRNA;Acc:NM_174520]
Coordinates
chr4:11637918-11639068:+
Coord C1 exon
chr4:11637918-11637962
Coord A exon
chr4:11638324-11638377
Coord C2 exon
chr4:11638970-11639068
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACCGTCTCCTGTGATTTCAGGGT
3' ss Score
8.33
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GGTGCCCGTGGAAGTGATGGAAGTGTGGGTCCTGTGGGCCCTGCT
Seq A exon
GGTCCCATTGGGTCTGCTGGCCCTCCAGGCTTCCCAGGTGCTCCTGGCCCCAAG
Seq C2 exon
GGTGAACTCGGACCTGTTGGTAACCCTGGCCCTGCTGGTCCCGCGGGTCCCCGTGGTGAAGTGGGTCTCCCAGGCCTTTCTGGCCCTGTCGGACCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013472-'16-19,'16-18,17-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.9=100),PF0139113=Collagen=FE(19.7=100)
A:
PF0139113=Collagen=PD(14.1=61.1),PF0139113=Collagen=FE(23.9=100)
C2:
PF0139113=Collagen=PD(18.3=39.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGGAAGTGATGGAAGTG
R:
TCCGACAGGGCCAGAAAGG
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]