GgaEX0028374 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23543089-23552520:+
Coord C1 exon
chr2:23543089-23543133
Coord A exon
chr2:23545408-23545461
Coord C2 exon
chr2:23552467-23552520
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCTTGCCTTTCATTTCATAGGGC
3' ss Score
10.12
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GGTGCTCGTGGGAGTGATGGCAGCGCTGGCCCCACTGGACCTGCA
Seq A exon
GGCCCCATTGGTGCTGCTGGTCCTCCAGGCTTCCCAGGTGCTCCTGGTGCTAAG
Seq C2 exon
GGTGCTCCTGGTCCTGAGGGAAACAACGGTGCTCAAGGTCCTCCTGGTGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX1-15/48=14-26
Average complexity
C3
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.9=100),PF0139113=Collagen=PU(2.4=13.3)
A:
PF0139113=Collagen=FE(21.8=100),PF0139113=Collagen=FE(20.5=100)
C2:
PF0139113=Collagen=PD(11.6=44.4),PF0139113=Collagen=FE(25.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCGTGGGAGTGATGG
R:
TGACACCAGGAGGACCTTGAG
Band lengths:
96-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]