BtaEX6026594 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30753107-30758033:+
Coord C1 exon
chr4:30753107-30753277
Coord A exon
chr4:30756283-30756405
Coord C2 exon
chr4:30757840-30758033
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTGTGTCCTCTCAAGATT
3' ss Score
7.21
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCTTTCAACATGCTGTTCCACAGAGCCATCGAGCAGACTGACAAGGTGGAGGACATGCCGGGGCGCATCTCCGCCCTGACCGAGAGCATCACCCATGCCGTCTTCCTCTACACCAGCCAGGCGCTGTTTGAGAAGGACAAACTCACCTTCCTGTCCCAGATGGCTTTCCAG
Seq A exon
ATTTTGCTGAGAAATAAAGAGATAGATCATCTTGAATTGGATTTCCTGCTTCGGTTCACAGTTGAACACACTTACCAGAGTCCTGTTGATTTCCTCACTAATCAATCATGGAGTGCTATTAAG
Seq C2 exon
GCGGTCGCCCTCATGGAAGAGTTTCGAGGCCTCGACCGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAGTGGGCAGAATCCGAGTGTCCAGAAAAGGAAAAGTTGCCACAAGAATGGAAGAAGAAAAGTTTAATACAGAAGCTGATTATTTTGAGAGCAATGCGCCCTGACAGAATGACATATGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'83-90,'83-89,84-90=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(10.2=48.8)
C2:
PF0302810=Dynein_heavy=FE(32.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTCTACACCAGCCAGG
R:
TCATTCTGTCAGGGCGCATTG
Band lengths:
252-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]