RnoEX0028431 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145819002-145823666:-
Coord C1 exon
chr6:145823496-145823666
Coord A exon
chr6:145822421-145822543
Coord C2 exon
chr6:145819002-145819195
Length
123 bp
Sequences
Splice sites
3' ss Seq
CACATGTGTGTTCTTTTGAGATC
3' ss Score
0.99
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GCTTTCAAGACACTGTTCCACAGAGCCATTGAGCAAGCTGACAAGGTGGAGGATACTCAGGAGCGCATCTGTGCCCTAATGGAGAGTGTCACCTATGCTACCTTCCTCCATGCCAGCCAAGCACTGTTTGAGAAAGACAAGCTCACATTTCTGTCCCAGATGGCTTTTCAG
Seq A exon
ATCTTGTTGAGAAGGAATGAGATCCACCCCCTCGAGTTGGACTTCCTGCTTCGGTTCACGGTTGAACACACCTACTCGAGCCCTGTTGACTTTCTAACTGCTCAGTCATGGAGTGCTGTTAAG
Seq C2 exon
GCAGTCGCCCTCATGGAGGAATTCCGAGGCCTAGACCGAGATGTGGAAGGATCTGCCAAGCAGTGGAGGAAATGGGTAGAGTCCGAGTGCCCGGAAAAAGAAAAGTTACCGCAAGAATGGAAGAAGAAAAGTTTAATACAGAAACTGATTATTTTGAGAGCAGTGCGGCCTGACAGGATGACATATGCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'91-93,'91-92,92-93
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(2.8=48.8)
C2:
PF0302810=Dynein_heavy=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCATTGAGCAAGCTGAC
R:
TTTCTTTTTCCGGGCACTCGG
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]