DreEX6040421 @ danRer10
Exon Skipping
Gene
ENSDARG00000094282 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr16:19399946-19402944:-
Coord C1 exon
chr16:19402774-19402944
Coord A exon
chr16:19402240-19402362
Coord C2 exon
chr16:19399946-19400124
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATTATTTTGCTTTTATTCAGGTT
3' ss Score
9.06
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GCCTTCAACAAAGTGTTCCTAAAAGCTATTGCGAGAGCTCCAAGTGATGAAGATGTATCGGTGCGTGTTTTATCTCTGACCGAGTCCATTACCCATTCAGCCCTTCAGTACACCTGCCAGGGGCTCTTCCAGCGGGACCGACTCACCTTCCTCACCCACACCGCCCTCCAG
Seq A exon
GTTCTGCTGATGAGAGGCTTCATTGATGGTGAGGATCTAGAGATTCTGCTAAGGTTTCCTGTAGAGATTTGCGAGAGCAGTCCTGTCAGCTTCCTGTCGCCACAGGCCTGGGGTGCTATTAAG
Seq C2 exon
GATGCATTCAGAGGTCTGGACAGGGATGTTGAAGGGTCTGCCAAGCGCTGGAAGAAACTGGTGGAGTCTGAGTGTCCAGAAAGAGAGCGGTTCCCTCAGGACTGGAAGACCAAGAGCCCTCTCCAGAGACTCATCATTCTAAGAGCGATCCGGCCTGACAGGATGACCTATGCTCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000094282-'45-51,'45-48,46-51=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0302810=Dynein_heavy=PU(2.8=48.8)
C2:
PF0302810=Dynein_heavy=FE(9.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACCGAGTCCATTACCCA
R:
GGCCGGATCGCTCTTAGAATG
Band lengths:
252-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]