BtaEX6026600 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30688350-30711083:+
Coord C1 exon
chr4:30688350-30688520
Coord A exon
chr4:30709441-30709676
Coord C2 exon
chr4:30710961-30711083
Length
236 bp
Sequences
Splice sites
3' ss Seq
GCCTGACTCTGATTCTCAAGGTC
3' ss Score
5.85
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCAGAGAAGATTCGCTGGGGCCAGTCTATTAAATCCTTCGAAGCGCAAGAGAAGACGCTCTGTGGAGATGTTCTCCTTACGGCAGCATACGTGTCTTATGTTGGATCCTTTACACAACAGTATCGCCAGGAACTGGTGGACTGCATGTGGGTTCCCTTTCTTCAAGAGAAG
Seq A exon
GTCTCCATCCCAATAACTGAAGGCGTGGACGTGATTGCCATGTTGACGGATGATGCCACCACCGCCACCTGGAATAACGAGGGACTGCCCAGTGACAGGATGTCCACGGAGAACGCCGCCATCCTGACGCACTGTGAGCGCTGGCCCCTGCTGATCGACCCCCAGCAGCAAGGGATCAAGTGGATCAAGAACAAGTATGGGACTGACCTGAAAGTCACACACTTGGGCCAGAAAGG
Seq C2 exon
GTTTTTGAATGACATTGAAACTGCTTTGGCCTTTGGAGACGTCATCTTAATTGAAAACCTTGAGGAAACAATAGATCCAGTGCTTGATCCATTGCTTGGTAGGAACACGATTAAAAAGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'76-81,'76-79,77-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.076 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(23.3=35.1)
A:
PF127812=AAA_9=PU(28.5=82.3)
C2:
PF127812=AAA_9=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGATTCGCTGGGGCC
R:
TTTCCCTTTTTAATCGTGTTCCTACC
Band lengths:
292-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]