RnoEX0028426 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145851096-145859161:-
Coord C1 exon
chr6:145858991-145859161
Coord A exon
chr6:145852888-145853123
Coord C2 exon
chr6:145851096-145851218
Length
236 bp
Sequences
Splice sites
3' ss Seq
ATTCAACTTTGGTTTCAAAGGTT
3' ss Score
5.92
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
TCAGAGAAGATTCGATGGGGTCAGTCCATTAAGTCTTTTGAAACTCAAGAGAAGACACTGTGTGGAGATGTGCTGCTCACGGCAGCGTTTGTGTCTTACATTGGGTCCTTCACAAGACAGTATCGCCAGGAACTGGTGGACTGCAAGTGGATTCCATTTCTTCAGCAGAAG
Seq A exon
GTTTCCATCCCAATAGCGGAAGGCCTGGACATGATTGCCACGTTGACAGACGATGCTACAATTGCCACCTGGAATAACCAAGGGCTACCCAGCGACAGGATGTCAACTGAAAATGCCACCATTCTAACTCACTGCAAGCGCTGGCCCCTGATGATCGATCCCCAGCAACAGGGAATTAAATGGATCAAGAATAAATACGGGCCTGACCTGAAAGTCACACACTTAGGCCAGAAAGG
Seq C2 exon
GTTTTTAAATGCCATTGAGATGGCCCTGGCCTTTGGTGATGTCATCCTAATTGAGAACCTCAAGGAGACAGTGGATCCAGTCCTGGGTCCTCTGCTTGGCAGGAACACCATTAAGAAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'80-81,'80-80,82-81
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(24.1=36.8)
A:
PF127812=AAA_9=PU(28.5=82.3)
C2:
PF127812=AAA_9=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAAGATTCGATGGGGTCA
R:
TCCTTTCTTAATGGTGTTCCTGCC
Band lengths:
292-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]