MmuEX0014956 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119190963-119199628:-
Coord C1 exon
chr12:119199458-119199628
Coord A exon
chr12:119193184-119193419
Coord C2 exon
chr12:119190963-119191085
Length
236 bp
Sequences
Splice sites
3' ss Seq
ATTCAACTTTGATTTCAAAGGTT
3' ss Score
6.19
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TCAGAGAAGATTCGATGGGGTCAGTCCATTAAGTCCTTTGAAACTCAAGAGAAGACACTGTGTGGAGATGTGCTCCTCACGGCGGCATTTGTGTCTTACATTGGGTCCTTCACAAGACAGTATCGCCAGGAACTGGTGGACTGCAAGTGGATTCCATTTCTTCAGCAGAAG
Seq A exon
GTTTCCATCCCAATAGCAGAAGGGCTGGACTTGATTGCCATGTTGACAGACGATGCTACAATTGCCACCTGGAATAACGAAGGGCTACCCAGCGACAGGATGTCAACTGAAAATGCCACCATTCTAACTCACTGCGAGCGCTGGCCCCTGATGATCGATCCCCAGCAACAGGGAATTAAGTGGATCAAGAATAAGTATGGGCCTGACCTGAAAGTCACACACTTAGGCCAGAAAGG
Seq C2 exon
GTTTTTAAACACCATTGAGACAGCCCTGGCCTTCGGTGATGTCATCCTAATTGAAAACCTCAAGGAGACAGTGGATCCAGTCCTGGGTCCTCTGCTCGGCAGGAACACCACTAAGAAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'65-64,'65-63,66-64
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.051 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=PD(15.4=93.0),PF060097=Laminin_II=PD(24.1=36.8)
A:
PF127812=AAA_9=PU(28.5=82.3)
C2:
PF127812=AAA_9=FE(18.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAAGATTCGATGGGGTCA
R:
TCCTTTCTTAGTGGTGTTCCTGC
Band lengths:
292-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: