BtaEX6026608 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013078 | DNAH11
Description
dynein, axonemal, heavy chain 11 [Source:HGNC Symbol;Acc:HGNC:2942]
Coordinates
chr4:30625095-30646182:+
Coord C1 exon
chr4:30625095-30625218
Coord A exon
chr4:30625637-30625779
Coord C2 exon
chr4:30646021-30646182
Length
143 bp
Sequences
Splice sites
3' ss Seq
ACTCATTCCTTTGGGGGCAGGGG
3' ss Score
4.53
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTAGACCTTGCCAATCTGTACATCAGAGCCGGAGCCAAGAACATGCCCACCGCGTTCCTGCTGACAGATGCCCAGGTTCTAGATGAGAGCTTTCTCGTGCTGATTAATGACTTGCTGGCATCAG
Seq A exon
GGGAGATTCCTGATCTGTTCAGTGATGAAGATGTAGACAAGATAATTTCTGGAGTTCGTGATGAAGTTCGTGGTCTGGGCATGGTGGACTCCAGAGAAAACTGTTGGAAATTCTTTTTGTTCCGGGTGCGACGACAACTCAAA
Seq C2 exon
ATCATTTTGTGTTTCTCTCCGGTTGGTCACACGCTGAGAAGTAGAGCTCGGAAGTTCCCAGCCCTGGTTAACTGCACGGCTGTTGACTGGTTCCATGCTTGGCCCCAGGAGGCTCTGGTCACAGTCAGCAGGAGGTTCATTGAGGAAACCAAGGGAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013078-'64-68,'64-66,65-68=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(15.3=100)
A:
PF127802=AAA_8=FE(17.5=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTACATCAGAGCCGGAGC
R:
TGAACCTCCTGCTGACTGTGA
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]