GgaEX7009563 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10087416-10088513:+
Coord C1 exon
chr18:10087416-10087607
Coord A exon
chr18:10087683-10087949
Coord C2 exon
chr18:10088352-10088513
Length
267 bp
Sequences
Splice sites
3' ss Seq
GACAACCCTTGCTTCCCCAGCTG
3' ss Score
8
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTGCTCTTTGAGGACGCAGTGTCTCACATTTGCAGAATCAGTCGGATCCTGGAGTCCCCCCGAGGCAACGCGCTGCTGGTGGGGGTGGGGGGCAGCGGGAAGCAGAGCCTTTCCCGGCTCGCTGCTTACATCAGCTCTCTAGACGTGTTTCAGATGACACTGAGGAAGGGCTATGGCATCCCAGACCTGAAG
Seq A exon
CTGGACCTCGCCTCGCAGTACATCAAGGCAGCCGTAAAGAACGTTCCTACAGTGTTCCTGATGACGGACTCCCAGGTGGCGGAGGAGTCGTTCTTGGTCCTGATCAATGACTTCTTGGCATCCGGGGAGGTGCCGGGGCTTTTCCAGGATGATGAATTGGAAAACATTATCAGTGCCATGAGGCCACACTTGAAGTTCCTCGGATTGCCAGACTCAAGGGAAAACTGCTGGAAATTATTTATAGAGAAGGTCAGGCGTCAGCTGAAG
Seq C2 exon
GTGATCCTGTGCTTCTCCCCCGTGGGCTCCACTCTGCGCGTGCGGGCAAGGAGGTTCCCTGCCATAGTCAACTGCACAGCCATCGACTGGTTCCATGAGTGGCCAGAGGACGCCCTGGTGTCTGTCAGCAGCAGGTTCCTGGAGGAGACGGGGGACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'59-67,'59-63,61-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(23.5=100)
A:
PF127802=AAA_8=FE(32.8=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTCGGATCCTGGAGTCC
R:
GTCTCCTCCAGGAACCTGCT
Band lengths:
305-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]