RnoEX0028484 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107068351-107076440:-
Coord C1 exon
chr10:107076249-107076440
Coord A exon
chr10:107070251-107070517
Coord C2 exon
chr10:107068351-107068512
Length
267 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTTTGTTGGATCCAGATG
3' ss Score
8.38
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
GTGCTGTTCGAGGACGCCGTGGCACACATCTGCAGGATCAACCGTATCCTGGAGTCCCCTCGGGGAAACGCCCTGTTGGTGGGCGTGGGTGGCAGTGGAAAACAGAGCCTGTCCCGCCTAGCCGCCTACATCAGCGCCCTGGACGTCTTCCAGATCACACTCAAGAAAGGCTATGCGATCCCAGACCTCAAG
Seq A exon
ATGGACCTGGCTGCCCAGTACATCAAGTCCGCGGTGAAGAACGTGCCCTCAGTATTCCTGATGACAGACTCCCAGGTGGCTGAGGAGCAGTTCCTGGTGCTGATCAACGACTTGCTAGCCTCGGGGGAAATCCCAGGCTTGTTTGGGGACGACGACCTTGAAAATATCATCTCCTCCATGCGGCCACAGGTGAAGTCTCTCGGTATGACCGACACCCGAGAGGCATGCTGGAAATTCTTCATTGAGAAAGTGCGGAAGCAGCTCAAG
Seq C2 exon
GTGATCCTGTGTTTCTCCCCCGTGGGCTCTGTCCTGCGTGTGCGAGCCCGGAAGTTCCCTGCCGTGGTCAACTGCACAGCCATCGACTGGTTCCATGAGTGGCCAGAAGACGCTCTGGTGTCTGTCAGCGCACGCTTCCTGCAGGAGACACAGGGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'60-67,'60-66,61-67
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(23.5=100)
A:
PF127802=AAA_8=FE(32.8=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACACATCTGCAGGATCAA
R:
ACAGACACCAGAGCGTCTTCT
Band lengths:
297-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]