MmuEX0014974 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117919604-117927792:-
Coord C1 exon
chr11:117927601-117927792
Coord A exon
chr11:117921380-117921646
Coord C2 exon
chr11:117919604-117919765
Length
267 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCTTGTTGGATCCAGATG
3' ss Score
7.99
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GTGCTGTTTGAGGATGCGGTGGCTCACATCTGCAAGATCAACCGTATCCTGGAGTCTCCTCGGGGAAATGCCCTGTTGGTGGGCGTGGGTGGCAGTGGGAAGCAGAGCCTCTCGCGCCTAGCCGCCTACATCAGTGCCCTGGACGTCTTCCAGATCACACTCAAGAAAGGCTACGCAATCCCAGACCTCAAG
Seq A exon
ATGGACCTGGCTACCCAGTACATCAAGTCTGCGGTGAAGAACGTGCCCTCGGTGTTCCTGATGACGGACTCCCAGGTGGCCGAGGAGCAGTTCCTGGTGCTGATCAATGACTTGCTGGCCTCCGGGGAAATCCCAGGCTTGTTTGGGGACGAAGACCTTGAAAACATCATCTCCTCCATGCGGCCACAGGTGAAGTCCCTCGGTATAGCCGACACTCGAGAGGCATGCTGGAAATTCTTCATCGAGAAAGTACGCAGGCAGCTCAAG
Seq C2 exon
GTGATTCTGTGTTTCTCCCCCGTGGGCTCTGTCCTGCGTGTGCGAGCCCGGAAGTTCCCTGCTGTGGTCAACTGCACAGCCATCAACTGGTTCCACGAGTGGCCAGAAGACGCTTTGGTATCTGTCAGTGCTCGCTTCCTGGAGGAAACAGAGGGCATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'62-61,'62-60,63-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(23.5=100)
A:
PF127802=AAA_8=FE(32.8=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCTCACATCTGCAAGAT
R:
ATACCAAAGCGTCTTCTGGCC
Band lengths:
296-563
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: