RnoEX6030091 @ rn6
Exon Skipping
Gene
ENSRNOG00000005451 | Dnah11
Description
dynein, axonemal, heavy chain 11 [Source:RGD Symbol;Acc:621088]
Coordinates
chr6:145898344-145912998:-
Coord C1 exon
chr6:145912875-145912998
Coord A exon
chr6:145912110-145912252
Coord C2 exon
chr6:145898344-145898505
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTTCTGTGGAGATAGGAG
3' ss Score
0.78
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
Exon sequences
Seq C1 exon
GTAGATCTGGCCAATTTGTACGTCAGAACTGGAGCCAAGAACATGCCCACCGTGTTCCTGCTGACAGATGCCCACGTTCTAGATGAGAGCTTCCTCGTGCTGATTAATGACTTGCTGGCATCGG
Seq A exon
GAGACATCCCAGGTCTGTTCAGTGACGAAGATACCGACAAGATCATTTCTGGGATTCGTAATGAAGTTCGAGGCCTCGGCATAACAGACTCCAGGGAGAACTGTTGGGCATTCTTTTTGGCCAGAGTCCGACTACAGCTCAAA
Seq C2 exon
ATGGTTTTTTGTTTCTCACCGGTTGGTCACACTCTGAGAGTTAGAGCCCGGAAGTTCCCAGCCCTAGTTAACTGCACAGCTATTGACTGGTTTCATGCATGGCCACAGGAAGCTCTGGTCTCAGTCAGCAGGAGGTTTATTGAAGAAATCGAGGGGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005451-'70-70,'70-69,71-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(15.3=100)
A:
PF127802=AAA_8=FE(17.5=100)
C2:
PF127802=AAA_8=FE(19.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACGTCAGAACTGGAGCCA
R:
CTCCTGCTGACTGAGACCAGA
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]